DILS 2006 Logo

Workshop Program

Sponsored by

Microsoft Research



metanomics health

EBI Industry Program



Thursday, 20.7.2006
12:00 - 13:30 Lunch
13:30 - 13:45
13:45 - 14:45
Keynote by Victor Markowitz
An Application Driven Perspective on Biological Data Integration
Session Chair: Ulf Leser
14:45 - 15:15 Coffee break
15:15 - 16:45 Session 1: Data Integration
Session chair: Bertram Ludäscher

16:45 - 17:15
Poster Flash Session

18:00 - 20:00 Poster session and drinks
20:00 - 21:00 Dinner

Friday, 21.7.2006
9:00 - 10:00
Keynote by Sarah E Knoop
Towards a National Healthcare Information Infrastructure
Session Chair: Barbara Eckman
10:00 - 10:30
Coffee break
10:30 - 12:00
Session 2: Text Mining
Session chair: Jacob Köhler

12:00 - 13:00
13:00 - 15:00
Session 3: Systems I
Session Chair: Jürgen Eils

15:00 - 15:30
Coffee break
15:30 - 17:00
Session 4: Potpourri
Session chair: Erhard Rahm

19:00 -
Workshop banquet

Saturday, 22.7.2006
9:00 - 10:30
Session 5: Project Updates
Session Chair: Paul Kersey

10:30 - 11:00
Coffee break
11:00 - 12:30
Session 6: Systems II
Session chair: Amarnath Gupta

12:30 - 13:30
13:30 - 15:00
Session 7: Short papers
Session chair: Bertram Weiss

15:00 - 15:30
Coffee break
15:30 - 17:00
Session 8: Workflow
Session Chair: Thodoros Topaloglou

Workshop ends

Accepted papers

Accepted Long Papers

Towards an Automated Analysis of Biomedical Abstracts
  Barbara Gawronska, Erlendsson Björn, Björn Olsson

A method for similarity-based grouping of biological data
  Vaida Jakoniene, David Rundqvist, Patrick Lambrix

Improving Text Mining with Controlled Natural Language: A Case Study for Protein Interactions
  Tobias Kuhn, Loic Royer, Norbert E. Fuchs, Michael Schroeder

An Information Management System for Collaboration within Distributed Working Environment
  Maria Samsonova, Andrei Pisarev, Konstantin Kozlov, Ekaterina Poustelnikova, Arthur Tkachenko

SIBIOS Ontology System: A Robust Package for Biological Data Integration
  Malika Mahoui, Zina Ben Miled, Mindi Dippold, Bing Yang, Srinivasan Sriram

On Querying OBO Ontologies using a DAG Pattern Query Language
  Amarnath Gupta, Simone Santini

Using Term Lists and Inverted Files to Improve Search Speed for Metabolic Pathway Databases
  Greeshma Neglur, Robert Grossman, Natalia Maltsev, Clement Yu

Data Object Models for Genome Annotation, Validation and Alternative Splicing
  Sven Mielordt, Ivo Grosse, Jürgen Kleffe

Link Discovery in Graphs Derived from Biological Databases
  Petteri Sevon, Petteri Hintsanen, Lauri Eronen, Kimmo Kulovesi, Hannu Toivonen

BioFuice: Mapping-based data integration in bioinformatics
  Toralf Kirsten, Erhard Rahm

SNP-Converter: an ontology-based mechanism to reconcile heterogeneous SNP descriptions for pharmacogenomic studies
  Adrien Coulet, Marie-Dominique Devignes, Malika Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli

Data Access and Integration in the ISPIDER Proteomics Grid
  Lucas Zamboulis, Hao Fan, Khalid Belhajjame, Jennifer Siepen, Andrew Jones, Nigel Martin,
  Alexandra Poulovassilis, Simon Hubbard, Suzanne Embury, Norman Paton

A cell-cycle knowledge integration framework
  Erick Antezana, Elena Tsiporkova, Vladimir Mironov, Martin Kuiper

An extensible light-weight XML-based monitoring system for sequence databases
  Dieter Van de Craen, Frank Neven, Kerstin Koch

Arevir: a secure platform for designing personalized antiretroviral therapies against HIV
  Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim Büch, Saleta Sierra-Aragon,
  Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig

Collection-Oriented Scientific Workflows for Integrating and Analyzing Biological Data
  Shawn Bowers, Timothy McPhillips, Bertram Ludäscher

Towards a Model of Provenance in Scientific Workflows
  Shirley Cohen, Sarah Cohen Boulakia, Susan Davidson

The Distributed Annotation System for Integration of Biological Data
  Andreas Prlic, Ewan Birney, Tony Cox, Thomas Down, Rob Finn, Stefan Graef, David Jackson,
  Andreas Kahari, Eugene Kulesha, Roger Pettett, James Smith, Jim Stalker, Tim Hubbard

SABIO-RK: Integration and Curation of Reaction Kinetics Data
  Ulrike Wittig, Martin Golebiewski, Renate Kania, Olga Krebs, Saqib Mir, Andreas Weidemann, Stefanie Anstein, Jasmin Saric, Isabel Rojas

Accepted Short Papers

Ontology Analysis on Complexity and Evolution Based on Conceptual Model
  Zhe Yang, Dalu Zhang, Chuan Ye

Distributed Execution of Workflows in the INB
  Ismael Navas-Delgado, Antonio J. Perez, Jose F. Aldana-Montes, Oswaldo Trelles

Knowledge networks of biological and medical data; an exhaustive and flexible solution to model life sciences domains
  Sascha Losko, Karsten Wenger, Wenzel Kalus, Andrea Ramge, Jens Wiehler, Klaus Heumann

On characterizing and addressing mismatches in scientific workflows
  Khalid Belhajjame, Suzanne M. Embury, Norman W. Paton

Proceedings will be published by Springer
Lecture Notes on Bioinformatics (LNBI).
Springer Lecture Notes on Bioinformatics


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