Workshop Program
Registration
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Sponsored by 
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| Thursday, 20.7.2006 |
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| 12:00 - 13:30 | Lunch |
| 13:30 -
13:45 |
Welcome |
| 13:45
- 14:45 |
Keynote by Victor Markowitz |
| 14:45 - 15:15 | Coffee break |
| 15:15 - 16:45 | Session 1: Data Integration Session chair: Bertram Ludäscher |
|
|
| 16:45
- 17:15 |
Poster Flash Session |
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| 18:00 - 20:00 | Poster session and drinks |
| 20:00 - 21:00 | Dinner
|
| Friday, 21.7.2006 |
|
| 9:00
- 10:00 |
Keynote by Sarah E Knoop Towards a National Healthcare Information Infrastructure Session Chair: Barbara Eckman |
| 10:00
- 10:30 |
Coffee
break |
| 10:30
- 12:00 |
Session
2: Text Mining Session chair: Jacob Köhler |
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|
| 12:00
- 13:00 |
Lunch |
| 13:00
- 15:00 |
Session
3: Systems I Session Chair: Jürgen Eils |
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|
| 15:00
- 15:30 |
Coffee
break |
| 15:30
- 17:00 |
Session
4: Potpourri Session chair: Erhard Rahm |
|
|
| 19:00
- |
Workshop
banquet |
| Saturday, 22.7.2006 |
|
| 9:00
- 10:30 |
Session
5: Project Updates Session Chair: Paul Kersey |
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|
| 10:30
- 11:00 |
Coffee
break |
| 11:00
- 12:30 |
Session
6: Systems II Session chair: Amarnath Gupta |
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|
| 12:30
- 13:30 |
Lunch |
| 13:30
- 15:00 |
Session
7: Short papers Session chair: Bertram Weiss |
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|
| 15:00
- 15:30 |
Coffee
break |
| 15:30
- 17:00 |
Session
8: Workflow Session Chair: Thodoros Topaloglou |
|
|
| 17:00 |
Workshop
ends |
Accepted papers
Accepted Long PapersTowards an Automated Analysis of Biomedical Abstracts
Barbara Gawronska, Erlendsson Björn, Björn Olsson
A method for similarity-based grouping of biological data
Vaida Jakoniene, David Rundqvist, Patrick Lambrix
Improving Text Mining with Controlled Natural Language: A Case
Study for Protein Interactions
Tobias Kuhn, Loic Royer, Norbert E. Fuchs, Michael Schroeder
An Information Management System for Collaboration within
Distributed Working Environment
Maria Samsonova, Andrei Pisarev, Konstantin Kozlov, Ekaterina
Poustelnikova, Arthur Tkachenko
SIBIOS Ontology System: A Robust Package for Biological Data
Integration
Malika Mahoui, Zina Ben Miled, Mindi Dippold, Bing Yang,
Srinivasan Sriram
On Querying OBO Ontologies using a DAG Pattern Query Language
Amarnath Gupta, Simone Santini
Using Term Lists and Inverted Files to Improve Search Speed
for Metabolic Pathway Databases
Greeshma Neglur, Robert Grossman, Natalia Maltsev, Clement Yu
Data Object Models for Genome Annotation, Validation and
Alternative Splicing
Sven Mielordt, Ivo Grosse, Jürgen Kleffe
Link Discovery in Graphs Derived from Biological Databases
Petteri Sevon, Petteri Hintsanen, Lauri Eronen, Kimmo Kulovesi,
Hannu Toivonen
BioFuice: Mapping-based data integration in bioinformatics
Toralf Kirsten, Erhard Rahm
SNP-Converter: an ontology-based mechanism to reconcile
heterogeneous SNP descriptions for pharmacogenomic studies
Adrien Coulet, Marie-Dominique Devignes, Malika
Smaïl-Tabbone, Pascale Benlian, Amedeo Napoli
Data Access and Integration in the ISPIDER Proteomics Grid
Lucas Zamboulis, Hao Fan, Khalid Belhajjame, Jennifer Siepen,
Andrew Jones, Nigel Martin,
Alexandra Poulovassilis, Simon Hubbard, Suzanne Embury, Norman
Paton
A cell-cycle knowledge integration framework
Erick Antezana, Elena Tsiporkova, Vladimir Mironov, Martin
Kuiper
An extensible light-weight XML-based monitoring system for
sequence databases
Dieter Van de Craen, Frank Neven, Kerstin Koch
Arevir: a secure platform for designing personalized
antiretroviral therapies against HIV
Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen
Schülter, Joachim Büch, Saleta Sierra-Aragon,
Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Thomas
Lengauer, Joachim Selbig
Collection-Oriented Scientific Workflows for Integrating and
Analyzing Biological Data
Shawn Bowers, Timothy McPhillips, Bertram Ludäscher
Towards a Model of Provenance in Scientific Workflows
Shirley Cohen, Sarah Cohen Boulakia, Susan Davidson
The Distributed Annotation System for Integration of
Biological Data
Andreas Prlic, Ewan Birney, Tony Cox, Thomas Down, Rob Finn,
Stefan Graef, David Jackson,
Andreas Kahari, Eugene Kulesha, Roger Pettett, James Smith, Jim
Stalker, Tim Hubbard
SABIO-RK: Integration and Curation of Reaction Kinetics Data
Ulrike Wittig, Martin
Golebiewski, Renate Kania, Olga Krebs,
Saqib Mir, Andreas Weidemann, Stefanie Anstein, Jasmin Saric, Isabel
Rojas
Accepted Short Papers
Ontology Analysis on Complexity and Evolution Based on Conceptual Model
Zhe Yang, Dalu Zhang, Chuan Ye
Distributed Execution of Workflows in the INB
Ismael Navas-Delgado, Antonio J. Perez, Jose F. Aldana-Montes,
Oswaldo Trelles
Knowledge networks of biological and medical data; an
exhaustive and flexible solution to model life sciences domains
Sascha Losko, Karsten Wenger, Wenzel Kalus, Andrea Ramge, Jens
Wiehler, Klaus Heumann
On characterizing and addressing mismatches in scientific
workflows
Khalid Belhajjame, Suzanne M. Embury, Norman W. Paton
| Proceedings will be published by
Springer Lecture Notes on Bioinformatics (LNBI). |
 |