- Conrad Plake, Loic Royer, Rainer Winnenburg, Jörg Hakenberg, Michael Schroeder: GoGene: gene annotation on the fast lane. Nucl. Acids Res., Web Server Issue, 37(Suppl. 2):W300-304, 2009.
- Dimitra Alexopoulou, Bill Andreopoulos, Heiko Dietze, Andreas Doms, Fabien Gandon, Jörg Hakenberg, Khaled Khelif, Michael Schroeder and Thomas Wächter: Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy. BMC Bioinformatics, 10:28, 2009.
- Peter Palaga, Long Nguyen, Ulf Leser, Jörg Hakenberg:
High-Performance Information Extraction with AliBaba.
Demo at EDBT 2009, St. Petersburg, March 23-26, 2009.
- Luis Tari, Jörg Hakenberg, Graciela Gonzalez, Chitta Baral:
Querying parse tree database of Medline text to synthesize user-specific biomolecular networks.
Pacific Symposium on Biocomputing (PSB), Hawaii, January 5-9, 2009.
- Jörg Hakenberg, Conrad Plake, Robert Leaman, Michael Schroeder, and Graciela Gonzalez:
Inter-species normalization of gene mentions with GNAT.
Bioinformatics, 24(16):i126-132, 2008. Presentation at European Conference on Computational Biology (ECCB), Cagliari, September 22-26, 2008.
- Jörg Hakenberg, Conrad Plake, Loic Royer, Hendrik Strobelt, Ulf Leser, and Michael Schroeder:
Gene mention normalization and interaction extraction with context models and sentence motifs.
Genome Biology, 9(S2):S14, 2008.
- Alexander A. Morgan, et al.:
Overview of BioCreative II Gene Normalization.
Genome Biology, 9(S2):S3, 2008.
- Florian Leitner, Martin Krallinger, Carlos Rodriguez-Penagos, Jörg Hakenberg, Conrad Plake, et al.:
Introducing Meta-Services for Biomedical Information Extraction. Genome Biology, 9(S2):S6, 2008.
|
