Participation: BioNLP-ST 2013 released sample data for the six different 2013 tasks: Genia Event Extraction, Cancer GEnetics, Pathway Curation, Corpus Annotation with Gene Regulation Ontology, Gene Regulation Network in Bacteria, Bacteria Biotopes
Brenden Chen, Jörg Hakenberg, Ramakrishnan R. Srinivasan, Dana Doheny, Inga Peter, Constanza Solis, Rong Chen, David F. Bishop, Makiko Yasuda, Robert J. Desnick:
Acute Intermittent Porphyria: High incidence of Pathogenic HMB-Synthase (HMBS) Non-Synonymous SNPs (nsSNPs) in Genomic Databases Suggests Other Genetic/Environmental Factors Cause the Acute Attacks.
AASLD Annual Meeting, 2014 (submitted).
Jörg Hakenberg, Goran Nenadić, Dietrich Rebholz-Schuhmann, and Jin-Dong Kim (eds):
Literature Mining Solutions for Life Science Research.
Advances in Bioinformatics, Vol. 2012. Table of contents.
Zayed Albertyn, Jörg Hakenberg, Hongjin Bian, Huifeng Niu, James Cai:
A high-throughput analysis pipeline for large next generation DNA sequencing studies. Presentation at IEEE BIBM 2012, Philadelphia, USA, 4-7 October 2012.
Jörg Hakenberg, Dmitry Voronov, Vo Ha Nguyen, Shanshan Liang, Saadat Anwar, Robert Leaman, Luis N Tari, and Chitta Baral:
A SNPshot of PubMed to find associations between genetic variants, drugs, and diseases.
J Biomed Info, 45(5):842-50, Oct 2012.
Jörg Hakenberg, Martin Gerner, Maximilian Haeussler, Illés Solt, Conrad Plake, Michael Schroeder, Graciela Gonzalez, Goran Nenadic, Casey Bergman:
The GNAT library for local and remote gene mention normalization.
Bioinformatics 27:2769-2771, 2011, DOI: 10.1093/bioinformatics/btr455.